More posts like this
-
Expand the dna sequence downstreama and upstream of the sequence for motif analysis
written by osiemen •Hi, Using DEXSeq I have identified a set of retina specific exons, for humans. I now retrieved the cdna sequences for these exons and I …
-
Identify TF binding motif for a given gene
written by yanweng •If I have a list of gene, is there anyway (software, algorithm?) I can identify the TF binding motif for each gene? -Objective: find TF …
-
How to identify Transcript Factors (TF) binding to my target sequence
written by Shicheng GuoHow to identify Transcript Factors (TF) binding to my target sequence Hi All, Anyone can provide some help to find Transcript Factors (TF) binding to …
-
Reinfrorce motif search with knowledge of protein sequence / structure
written by massa.kassa.sc3naHi everyone, I'm doing some work with DNA motif discovery - especially with TF binding sites (usually sigma factors which have dual motif (-10 and …
-
how to get the binding motif of splicing factor
written by camelbbsI want to ask if anywhere we can find the binding motif (consensus sequence) of splicing factor or RNA binding proteins. And another, does one …
-
TF motif half-site enrichment
written by varsha619Any suggestions for a good tool to identify TF binding motif half-site enrichment using ChIP-seq data? I have tried MEME and MEME-ChIP, they work well …
-
Spacer length analysis using MEME
written by varsha619Hi, I am new to ChIP-Seq analysis and want to get a spacer length distribution in my TF binding peaks using MEME. I used MEME-ChIP …
-
Programm/tool for drawing promoter motif image
written by teresa.noviello89 •Hi. I have a list of putative TF binding site on the promoter of a studied gene. I have both the start-end and the sequence …
-
number of transcription factor binding sites
written by sasa •Hi all! I use MEME to predict the transcription factor binding site, and it gives me a exact specific position. I want to know a …
-
motif for TF within CTCF boundary
written by asharmatelome<p>Hi,</p> <p>I want to find motif for my TF within the CTCF boundary. I have some 200 genes where I want to do this analysis. …
Hello zhao03!
We believe that this post does not fit the main topic of this site.
The question has insufficient details and has been inactive for a while. Please add a comment if this is still of interest, then we'll reopen it.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!