Protein TMT data; Dispersion plot looks strange
https://1drv.ms/b/s!AgjiBVqYkILZg7sS9Bavf_-6YPEYLg?e=1xDxkK
Kindly go through the image. I am using DESeq2 to analyse protein TMT data. I get the differentially expressed proteins. However, the dispersion plot looks strange. Does that mean that DESeq2 cannot be used to analyse the data? Note that I did not normalise similar to the libary normalisation done for RNASeq study.
Thanking you in advance for any suggestions and comments.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Proteomics Data Analysis
written by frarodmar17 •
-
Gene with hundreds of counts very similar, is it possible to use it to get DEGs?
written by Anderson •
-
Query for limma and DEseq2
written by fahim •
-
RNA-seq Normalisation methods to compare using raw miRNA data
written by raavi21198 •
-
DESeq2 analysis with covariates with and without log transformation
written by haroonnaim •
-
What are good packages to find Differentially Expressed Genes from RNASeq RSEM and log2(x+1) transf…
written by J. Smith
-
What is the most suitable normalisation technique for RNASeq data?
written by J. Smith
-
Is it possible to analyze differentially expressed genes without sample replicates using DESeq2?
written by Sarath Kumar •
-
Enrichment analysis of Differentially expressed genes
written by AP •
-
about dispersion_plot and dispersion_plotLocal in DEseq2 analysis
written by Emily •
