Tool: Fix Prokka fragmented gene annotations - Long read assembly · Biostar

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Tool: Fix Prokka fragmented gene annotations - Long read assembly

Hej hej,

I wrote a script I included in AGAT called agat_sp_prokka_fix_fragmented_gene_annotations.pl dedicated to detect fragmented genes due to frameshifts caused by small indels (1-2 nucleotide long) in PROKKA annotations. It allows to fix such cases by modifying your annotation and your fasta file when parameter activated.

I have heard the demand of such tool several times, so I hope it could help.

You can find some information here too.

fragmented-gene-annotation prokka

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updated 3.1 years ago by Ram

• written 5.9 years ago by Juke34

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