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Pipeline for Genomics WES raw data

Hi everybody, Recently, I started my journey of analyzing Genomic WES data using galaxy. However, I need to find the most appropriate pipeline to do so, using python and applicable on Linux?? I know there's the GATK pipeline. However, I'm wondering whether there's other complete and comprehensive pipelines, with information about software and command-line guidelines.

Any suggestions are more than appreciated ☺️

next-gen
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written by khairy.ahmed12 • khairy.ahmed12

Hello khairy.ahmed12!

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written by ATpoint ATpoint

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