Hi everyone, I need to use seqkit sort option to sort a multifasta file by its sequences name. I've been using `seqkit sort -N multifasta.fa`. …

I've been using this to obtain gene name and ensembl id def get_gene_name(row, CHR, pos): genes_list=data.gene_names_at_locus(contig=row[CHR], position=row[pos]) return list(filter(None, genes_list)) def get_ensembl_id(chromosome, position): ensembl_url = …

Hi, I am working on comparative genomics, and I want to find out the syntenic region of two species. I find there are two kinds …

Hi guys. I am trying to do some researches on synteny across human and non-human primates. It is known that synteny across species has been …

Hi everyone, I have a list of SNPs (`rs`) and I would like to extract all the genes and their functions that are located 50kb …

Hi, everyone! I study flowering plants and I need to download **only** primary transcripts from them. So I've been using Phytozome for this purpose. But …

Hi, everyone! I am trying to use the MCScanX tool for ploting circular displays of syntenic genomic blocks. When I try running $ java circle_plotter …

Hi everyone! I would like to ask about a problem that emerged when trying to retrieve a genomic region using the multiple genome alignments in …

Hi Everyone, I have a broad question, I've been working with segmented dsRNA viral genomes for reovirus and I have noticed interesting alignments using DNAstar's …

<p>Hi all,</p> <p>I have been stuck here for quite a long time. I would be really grateful if someone can help me out.</p> <p>I have …