VEP - gnomAD v3 (hg38) annotation AF
I am working with some WGS human hg38 tests. I noticed that VEP has as default only gnomAD exomes included, and adding the annotation through dbNSFP only works for SNP (and not INDEL).
I wondered if there is there a way to manually add AF annotation directly from gnomAD database files?
Thank you so much in advance for any help!
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Use
bcftools annotatewith the gnomad bgz file as the annotation source.