targeted locus amplification plot
Hello, Biostars community.
I have CHO cells with a transgene inserted into it at an unidentified location. I wish to plot per chromosome coverage from a BAM file obtained from aligning TLA (targeted locus amplification) sequencing data (50 bp single-end reads). I want to get something like:
Can anyone recommend a tool for this? I don't know how to find a transgene insertion site in a different way.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Troubleshooting an MLPA-confirmed OPA1 exon duplication missing in ONT Long-Read SV callers (cuteSV…
written by Kevin •
-
Problem aligning target capture sequencing of a few hundred regions to the human reference genome
written by Miguel •
-
Identification of transgene insertion site using Illumina DNA Sequencing
written by ccstaats •
-
identifying transgene insertion site in WGS
written by Assa Yeroslaviz
-
Judging best assembly
written by deepti1rao •
-
BWA-MEM output for two species
written by maheetha.b •
-
Tool: Introducing CrossBlock, a BBTool for removing cross-contamination
written by Brian Bushnell
-
How to confirm correct integration of a reporter using the CRISPR/Cas9 mediated homology-repair DNA…
written by Andrea •
-
Question : Plotting Per Chromosome/All Chromosome Coverage From Ngs Bam File
written by thecuriousbiologist
-
How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
written by User 6659 •
