How to extend contigs from single-end reads?
Hi all,
I have raw sequencing datas of metagenomes and all of them are single-end reads. I would want to prolong/extend contigs. I thought of PRICE (Ruby, JG., et al, 2013) but it only works with paired-end reads. Do you have any recommendation on what software could I use?
Thank you for your much appreciated help in advance!
Have a great day
2 answers
You can take a look at tadpole.sh from BBMap suite. A guide is available here.
There are many such tools. For example:
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