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How to extract particular gene sequence from a file using gene IDs in LINUX

Hi, I am trying to retrieve sequences of genes from a large size genes sequence file using gene_IDs. Could anyone please share the Linux command, how to retrieve the sequences using gene_IDs. e.g.,

transcript_names = ">i0_HQ_LWC_c4/f13p0/788" , " >i0_HQ_LWC_c11/f12p0/776"

sequence

gene sequence linux command

1 answer

See answers in: C: How do I extract Fasta Sequences based on a list of IDs?

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