This is a test version of Biostars. For the public version, visit https://www.biostars.org.
All Possible Protein Sequence From A Nucleotide Sequence

Hello,

Which tool can I use to find all possible protein sequence from a nucleotide sequence ? In all the 3 possible frames ?

Thanks,

N.

nucleotide protein translation
• 4,622 views • link
updated by Giovanni M Dall'Olio Giovanni M Dall'Olio • written by Nicolas Rosewick Nicolas Rosewick

3 answers

You can also use the transeq and sixpack tools from the EMBOSS package. They have both a web and a command line interface, so you can choose whathever you prefer.

• 1 views • link
written by Giovanni M Dall'Olio Giovanni M Dall'Olio

The NCBI ORF Finder works well to find all six possible translations.

• 0 views • link
written by Michael Kuhn Michael Kuhn

This old Expasy tool does the same job with slightly different display options

http://web.expasy.org/translate/

Remember to BLASTX against protein databases first. You can then see the correct frame direction and you can even fix frameshifts

• 0 views • link
written by cdsouthan cdsouthan

Log in to answer this question.

More posts like this