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Ncbi Length Search

Hi,

Is it possible to specify the nucleotide length limit in a ncbi search ? I don't find anything on the NCBI website about this ?

Thanks,

N.

ncbi length search

Is this for a nucleotide similarity search? Or for a search for an entry in a nucleotide database?

1 answer

You can specify various options in the Entrez Query field to search against subset of the database. Here is a description of the field: http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#entrez_query

For example to limit search against entries that are between 500 to 1000 base pairs/residues you would type into the Entrez Query field: 500:1000[slen]

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