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How to analyze multiple MAF files

Hello!

I have about 80 MAF files each corresponding to an individual tumor. I would like to analyze with maftools and comparing between groups defined by clinical data.

How do I go about combining all of these MAF files into their clinicaly relevant subset for cohort comparison in maftools?

I have from the same samples a tumor information spreadsheet I used for DESeq. Thanks!

maftools wes

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