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re_raz, please read available online documentation, papers and vignettes first before posting. The same goes for this question: differential expression from sc RNA seq
Yes, there is a difference, clearly outlined in the SCtransform paper. Results are not the same, please read the paper and the SCtransform vignette.
https://github.com/ChristophH/sctransform
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1874-1
No problem at all, we all were new at some point. By experience I can tell you that extensive reading is always beneficial of you are getting started with a new type of analysis since many of the common obstacles are described in the manuals/vignettes. If you then have specific questions feel free to post but please be sure to read the available resources first.
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