What will be the Ideal Minimum base quality to count reads
Hello I am using GATK ASEReadCounter for this one of the option --min-base-quality 0 zero is defualt, confused can any one suggest me which value will be ideal. I have illumina smart-seq reads.
thank you
• 853 views
•
link
written
by
hemantcnaik •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
dbSNP and indels
written by wonde2000 •
-
deeptools how to choose a bodylength
written by luckysardar171 •
-
How to get orthologs between Two species in orthodb
written by hemantcnaik •
-
Mitigating technical allelic dropout in Single cell allelic RNA seq analysis
written by luckysardar171 •
-
Best mapping tool for bacterial RNA (paired end sequence)
written by priya.saxena •
-
GATK variant calling on multiple bam files
written by User000
-
Getting gene level readcount from the Asereadcounter GATK tool
written by hemantcnaik •
-
Mapping percentage require for single cell allele specific analysis
written by hemantcnaik •
-
Scafolding and gap filling
written by bhagyathimmappa •
-
Use of --sjdbOverhang option in STAR program
written by Himanshu Bhusan Samal •
