Allele specific Single cell rna seq data normalization
Hello Currently I am working on single cell Allele specific analysis, wanted normalize allele count, is there any tool for normalizing data by allele wise please suggest me
rna-seq
sequencing
alignment
gene
• 963 views
•
link
written
by
hemantcnaik •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Combining single-end and paired end reads
written by shri.au •Hello everyone, So I am currently working on differentially expression analysis using publicly available datasets. I have processed the raw reads and obtained count files. …
-
Single cell Cluster based only perticular marker gene
written by luckysardar171 •Hello, there, I am doing single cell RNA-Seq analysis wanted cluster the cells based on specific marker genes is there any way to do like …
-
Converting hdf5 file to loom file
written by sidrah.maryam •Hello, I am currently processing the single cell data. I have hdf5 file, however, I want the loom file for downstream analysis. Can anyone please …
-
Mitigating technical allelic dropout in Single cell allelic RNA seq analysis
written by luckysardar171 •Hello, I am currently working on single cell Allele specific analysis, have the alleleA and alleleB count, Can any one suggest me any computational methods …
-
Finding different normalization approaches and choose which one is better
written by luckysardar171 •Hello, I am working on single cell RNA seq analysis wanted to normalize my read count which are coming from HTseq, working on different methods …
-
Normalization of single cell allele counts RNA-seq analysis
written by luckysardar171 •Hi guys, I 'm working on single cell allelic counts RNAseq data with the heterogenous cell population and I have the allelic raw read read …
-
Mapping percentage require for single cell allele specific analysis
written by hemantcnaik •Hello I have mapped my single cell data using STAR aligner with the mouse mm10 genome mapping percentage when I run multiqc its showing on …
-
Remove or keep the overdispersed reads in Single cell RNA seq analysi
written by hemantcnaik •Hello I am working on single cell in my data fastqc showing overdispersed read as below I have to remove this sequences or not can …
-
How handle the allelic dropout event in single cell analysis
written by hemantcnaik •Hello, Can any one suggest me best way to handle the dropout event in single cell allele specific analysis
-
Single cell allelic normalization
written by hemantcnaik •Hello, everyone, I am doing allelic analysis wanted to do normalization of the allelic count is there any analysis tool can you recommend, any suggestions?