How Do I Convert Hg19 Gvf To Hg18 Gvf Using Ucsc Liftover Tool

Hi,

I am trying to convert GVF files from hg19 to hg18 version using liftover tool. However liftover gives only in GFF/GTF format. But this output is not relevant to me as the further analysis I have to do is on GVF format.Any help would be appreciated. Thanks..

hg19 liftover

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updated 5.9 years ago by Biostar

• written 14.2 years ago by gupta.ne •

2 answers

There is an alternative for liftover. http://www.ncbi.nlm.nih.gov/genome/tools/remap

Different alignment strategy and additional remapping parameters.

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written 13.4 years ago by deanna.church

This seems to be a duplicate of:

Liftover Gvf From Hg18 To Hg19

Long story short, there is no alternative to liftover, you have to make do with what you have.

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updated 5.9 years ago by Ram

• written 14.2 years ago by Istvan Albert

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