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Free codon optimization tools for ordering DNA?

I was wondering if there is a free codon optimization tool that can be integrated into code to generate the codon-optimized version of many DNA sequences? In the past I used thermofisher's built in tool to do codon optimization. However, that process has to be done one by one for each DNA sequence that you want to optimize.

~ Cheers

codon-optimization
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updated by mittu1602 mittu1602 • written by mpaco • mpaco

If you can get hold of the relevant codon frequency table for your organism of interest, it's quite easy to write some e.g. python code to do this.

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written by Joe Joe

1 answer

The best codon optimization tool I know about is JCat. Unfortunately, the website is down right now, so I am not sure it will be useful to you. A nice online optimizer is here, and it has a python API with similar functionality.

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written by Mensur Dlakic Mensur Dlakic

Thank you! This is helpful.

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written by mpaco • mpaco

Is there any other similar tool which can be downloaded and installed on linux system?

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written by mittu1602 mittu1602

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