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Platanus: command not found

I installed Platanus_v1.2.4 on my ubuntu 18.04.3 LTS. then moved it into miniconda3>bin. Created a temporary folder inside reads folder using "mkdir temp" command. then, write this command, "Platanus assemble -o platanus_k31 -f read_1.fastq read_2.fastq -k31 -t 2 -m 2 -tmp ./temp 2> assemble.log" But a assemble.log opens with a message command not found. What should I do?

assembly software error
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updated by Mbillah Mbillah • written by puipui • puipui

what is the output of echo $PATH?

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written by Joe Joe

2 answers

Have you checked the path at which Platanus is installed? You can do that using which Platanus.

Also, have you checked if the installed path globally accessible as you haven't mentioned the absolute path in the above command? You can make the installed path accessible by including it in your ~/.bashrc file.

Hope this helps!

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written by Shalu Jhanwar Shalu Jhanwar

Step1: Download precompiled file (http://platanus.bio.titech.ac.jp/?ddownload=145) Step2: rename it as "platanus" Step3: Finally run ./platanus then you can see the available platanus option.

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written by Mbillah Mbillah

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