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ICGC(LRCA-FR) raw_read_count is error. Can normalized read count transform to TPM?

During my process of the expression matrix of LRCA-FR, I found that the raw_read_counts of each gene in different samples are the same, while the normalized_read_counts are not. Probably the normalized counts are corrected for further analyzed, and I was wondering whether the normalized read counts can transform to TPM? Besides, how the read counts were normalized in this project? Many thanks!

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rna-seq r

1 answer

It's my first time to ask for help in the forum. And I don't know how to manage the picture. Probably this works: https://ibb.co/JxSf4ZL THX!

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