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10X single-cell Seuart object

For example, I have a Seuart object GSM7, After analyse , cells in GSM7 are divided into different cell cluster. Then annotation these cell cluster ,get some cell types i want to get a new Seuart object GSM_7_B that its cells type all =="B cells"

thanks for guidance

rna-seq

1 answer

If you want to extract the cells of a specific cluster, you can use subset(). The Interaction Tips vignette has a few examples such as:

subset(pbmc, idents = c("NK", "B"))

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