Questions about VCF file

What is the expected length of a VCF file produced after sequencing a typical human genome?

snp

• 583 views • link

written 6.2 years ago by deiasudan789 1

0 answers

No answers yet.

More posts like this

Bcftools consensus unexpected output
written 2.3 years ago by selplat21 2

Hello, I am currently trying to call a consensus sequence for a genome that is 1.2 Gbp in length. I have a VCF file that …
Allele Frequency using different kits versions: Agilent SureSelect Human All Exon V4 and V5
written 4.1 years ago by m.bamajboor 0

I have a question regarding the kits used for sequencing. I'm in a process of calculating the allele frequency of a group of samples, I …
plink - generate VCF
written 5.4 years ago by esimonova.me 3

Is it possible to use internal reference in order to generate VCF file from Genome Studio map and bed files? If I dont use internal …
Changing the reference allele
written 6.0 years ago by evoecogen 3

Hello, I have a population genomics dataset including 100s of individuals of species A, mapped to the reference genome of species A. I also have …
Question: Where can I download ALU, SVA and LINE1 Elements in fasta format?
written 6.5 years ago by ncxhit 0

Dear Community, I am trying to construct an individual genome from reference genome in fasta format and his/her structure variation file in VCF format. I …
VCF file from DanteLabs Dante Labs does not load in IGV
written 7.5 years ago by urishab 1

I have received my VCF SNP file from Dante Labs (DanteLabs.com) based on whole genome sequencing. The reference is hg19 When trying to load the …
EVS non-reference variants for African-American
written 11.0 years ago by reza.jabal 58

Hello Guys, The 1000 Genomes consortium published a paper just couple of days ago on conclusion of the project in [nature][1]. According to them a …
Methods to count Number of SNPs and Novel SNPs in a Variant Calling File (.vcf) ?.
written 11.0 years ago by ravi.uhdnis 22

Hi, I am looking for methods to count number of Single Nucleotide Polymorphism (SNPs) in a variant calling file (.vcf). Also, what are the ways …
library template length in exome seqeuncing
written 11.7 years ago by wangyi2412 25

For Illumina paired-end (100bp each end) exome sequencing: Before taking the sample library to the sequencing machine, there is a step to test the length …
What Is 'Read Length' In The Context Of Simlibrary?
written 13.8 years ago by KCC 409

<p>What does read length mean in the context of the SimLibrary software? The program has an option '-r' which is said to mean 'Read length …