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MG RAST for Eukaryota

Hi

I have a metagenome dataset containing mostly Eukaryota. I know that MG-RAST is not capable of accurately predicting eukaryote genes, but I performed prediction with a separate tool (MetaEuk) and now have all the protein sequences. Can MG-RAST handle these and give reliable KEGG annotations?

Thanks!

mg-rast eukaryota metagenomics functions kegg
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updated by young_bioinformatician young_bioinformatician • written by TomM • TomM

1 answer

Hi Tom,

Yes, you can go with the predicted proteins for the annotation/downstream analysis.

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written by young_bioinformatician young_bioinformatician

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