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How to get nucleotide sequence of the foxp3 enhancer ?

Hello everyone, I am doing some research on the regulation of FOXP3 expression, FOXP3 has three enhancers, also known as CNS1, CNS2, CNS3, but I want to get the nucleotide sequence of the FOXP3 enhancer and its location. Does anyone know how to search it and get it? Thank you so much!

chip-seq rna-seq
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updated by Alex Nesmelov Alex Nesmelov • written by zhuobaowen • zhuobaowen

yes, I only get the sequence of transcrips of FOXP3 from NCBI GENE database, but I don't know the location of CNS.

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written by zhuobaowen • zhuobaowen

For mouse genome the sequences seem to given in the supplement of the paper here (page 20 of the supplement of the paper doi: 10.1038/nature08750 . You can blat the sequences on to mouse genome in the UCSC genome browser to get the genomic location.

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written by microfuge microfuge

1 answer

You may try http://slidebase.binf.ku.dk/ and https://fantom.gsc.riken.jp/zenbu/

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written by Alex Nesmelov Alex Nesmelov

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