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Bash loop for the creation of multiple indexes

FILES=(/data/*.fna.gz);

for f in "${FILES[@]}";

do

bowtie2-build $f *#output file specification, how can i specify output for each independent reference build - i have 4 *

done

assembly alignment genome
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written by Ada • Ada

1 answer

FILES=(/data/*.fna.gz); for f in "${FILES[@]}" ;do bowtie2-build $f done

builds index for each genome, but how do I create respective outputs

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written by Ada • Ada

Resolved loop. No further comments needed.

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written by Ada • Ada

It is not useful to leave comments such as this since they don't help the next person coming along with the solution. Please edit the answer above and post the solution there.

You also should follow-up on your past threads. Upvoting comments that help you find a solution, accepting answers that work (green check mark) is the proper way of acknowledging help you receive from contributors to this forum.

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written by GenoMax GenoMax

Thank you for letting me know

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written by Ada • Ada

Resolved loop:

FILES=(/data/*.fna.gz); for f in "${FILES[@]}" ;do bowtie2-build $f index done
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updated by GenoMax GenoMax • written by Ada • Ada

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