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Pathway and gene analysis based on GWAS results

Hello Do you have any advices about performing a pathway analysis or gene analyses based on GWAS results ? Is there any newer methods other than Vegas and Magenta (based on Grch37) because my data is Grch38. Thank you very much

snp pathways gwas
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updated by Sam Sam • written by mel22 mel22

1 answer

You can try out MAGMA, which is one of the most popular tool for pathway analysis on GWAS results

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written by Sam Sam

Thank you very much Sam I will try this

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written by mel22 mel22

any better method come out compared with "magma"?

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written by Friyunnwoo • Friyunnwoo

Hi Friyunnwoo, The best analysis tools are not free, MAGMA still a good choice ...

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written by mel22 mel22

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