Error in eigen using VEGAS
Hello,
I'm trying to run a gene-set based analysis using VEGAS, a software that calls PLINK and R, and uses HapMap to estimate patterns of linkage disequlibrium for each gene. I just followed the basic format ./vegas [input file] -pop hapmapCEU and I received this error:
Error in eigen(m, only.values = TRUE, symmetric = TRUE) : 0 X 0 matrix
Calls: is.positive.definite -> eigen
Execution halted
Do you have any idea on what might be causing this error and how could I correct it?
Thanks a lot
Claudia
• 2,220 views
•
link
updated
by
Ram
•
written
by
hallie.cla •
•
written
by
hallie.cla •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
tximport error (medianLengthOverIsoform)
written by LGG •
-
Issues with Mixture file when using CIBERSORTx
written by mateomejias •
-
Using CIBERSORTx on Mouse RNAseq Data
written by newbie •
-
Error in mvnX when running processSamples.R of OncoCNV
written by mwarrier •
-
GEOquery R Package Error: cannot open URL (http://)
written by jblack29 •
-
ABSOLUTE error, calulate tumor purity Error in GetLambda
written by dreamixiyue •
-
How to make ibd2.R use local recombination rate profile
written by Emma •
-
Error in Snp set analysis using MetaSKAT
written by NB
-
Error in use the EDAseq R package in RNASEQ analyse
written by minlingl •
-
Error in use the EDAseq R package in RNASEQ analyse
written by minlingl •
It fails because it didn't get a matrix with data. This is indicated by '0 x 0 matrix'. Investigate why
eigen()is not receiving a matrix with data.Have you ever try other gene-set approach? for example, rvtest