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Reference file Annotation

I am using MethylKit package for WGBS Data analysis. With this package two annotation reference files are given refseq.hg18.bed and cpgi.hg18.bed. These are not complete file. From where I can get the whole file, so that I will be able to do the complete analysis with them.

next-gen sequencing
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updated by Kevin Blighe Kevin Blighe • written by shrinka.genetics • shrinka.genetics

1 answer

Hey,

You can get these in BED format for any genome version via the UCSC Table Browser. Please follow the advice here (for CpG islands): A: How to find CpG island for specific region

Kevin

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written by Kevin Blighe Kevin Blighe

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