uORF annotation in Ensembl/GENCODE
Do protein coding genes in Ensembl/Gencode GTF files always only have one CDS? For example if a protein has a uORF that has been demonstrated to be translated, will it be annotated as a second CDS in the transcript, or can I always assume that the 5' most start codon in a GTF record is the start of the main CDS?
1 answer
Log in to answer this question.
More posts like this
-
What is exactly meant by "GENCODE TSS"?
written by ConvolutedGenome •
-
How to add the coordinates of UTRs, CDS, start codon and stop codon to
written by Issac •
-
GFF/GTF: how to translate CDS genomic coordinates to protein coordinates
written by abascalfederico
-
SnpEff START/STOP codon not found error
written by thomasbersez
-
Find stop codon for coding transcript in gencode gtf if not given?
written by mary.a.wood.91 •
-
GTF to FASTA including stop codon
written by athey.johnc •
-
Finding uORFs given .fa and .gtf file
written by fire_water
-
Where to get Gene start position to end positon for all gene in an organism
written by Bioblazer
-
Discrepancy between gene biotype of SHANK3 in GENCODE vs NCBI
written by Brian Gudenas
-
Hg37: Bad Annotations From Ensembl?
written by Pablo
