How to add the coordinates of UTRs, CDS, start codon and stop codon to
Hi there,
I have a document in .gff format in which there is a list of coding intergenic transcripts. The basic annotations of each transcript have been listed. The transcript start sites, transcript end sites, start and stop of CDS, and coordinates of each exon within each transcript have been listed. I was wondering if there is any software I can use to: 1) add UTRs, start codon and stop codon to the .gff document, 2) convert .gff to the formal .gtf format? Thanks for any suggestions!
Best, Issac
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Difference between mRNA and transcript record types in GFF3 and GTF
written by William
-
Lengths of UTR3, UTR5 and ORF from gtf file
written by bio_elle •
-
Predicting coding sequence region from GFF with exons + reference genome
written by grey •
-
SnpEff START/STOP codon not found error
written by thomasbersez
-
Find stop codon for coding transcript in gencode gtf if not given?
written by mary.a.wood.91 •
-
How to add the start and stop position information to a gff file?
written by I0110
-
GTF to FASTA including stop codon
written by athey.johnc •
-
Where to get Gene start position to end positon for all gene in an organism
written by Bioblazer
-
How to convert exon genomic coordinates to protein coordinates
written by carlota.rubio •
-
number of .bam reads mapping to genes in gff format
written by Floydian_slip
