More posts like this
-
How to correctly use bedtools merge?
written by Amisha •
-
Intersecting Roadmap's Histone ChIP-seq data using BedTools?!?!??!
written by ConvolutedGenome •
-
How to curate ChIP-seq data, then normalize the depth?
written by Omar Mohamed •
-
Mapping Histone Chip-seq reads to defined region around TSS of RefSeq genes
written by Researcher •
-
Can be merged biological replicates?
written by star
-
Tissue-specific Histone Mark bam files?
written by epaminonda •
-
Histone modification peaks to compare with my ChIP-seq peaks
written by fhassanz •
-
check whether two bam files are sequenced from the same sample
written by Ming Tommy Tang
-
Bedops element or merge operation_which one is better to use in predicting regulated genes?
written by xiaoyonf •
-
integration analysis of multiple ChIP-seq (TFBS or histone from ENCODE)
written by xfliwz
42 bp :-)
There is no gold standard. Any overlap is fine, but like 50% overlap at least (-f and -pct option in bedtools intersect) is fine as well.