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extracting count matrix from GEO

Hi

I would like to extract count matrix data from "GSE98969" however when i did expr(), there is no data at all. May i know if i am missing out something?

data = getGEO("GSE98969") datExpr = exprs (data[[1]]) dim(datExpr) [1] 0 97

or does it mean only raw files were uploaded. thanks

geo
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updated by Kevin Blighe Kevin Blighe • written by lordoftheflower • lordoftheflower

1 answer

Indeed, there does not seem to be any normalised data for this study, neither in the FTP record. You could check other websites where the authors may have hosted it; otherwise, re-processing from raw data is necessary.

You could, of course, also ask the authors directly.

Kevin

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written by Kevin Blighe Kevin Blighe

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