Question about the parameter -fs in bedtools.
Hi, i have recently learned Bedtools,but i'm not totally understand the parameter -fs. For example,in the chip-exo pipeline in order to generate stranded read counts trim 1,using -fs. Code as following: bedtools genomecov -ibam bamfile -fs 1 -d -strand + bedtools genomecov -ibam bamfile -fs 1 -d -strand - So what exactly does it do?
Thanks.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
bedtools genomecov issue with calculating coverage across called peaks?
written by lescano.v.jr •
-
Why exactly do I need to fix ref allele using bcftools ?? [Genotype data]
written by ConvolutedGenome •
-
RPM in ChIP-seq analysis
written by donny.dw •
-
What exactly does the -fs flag (fragment size) do in bedtools genomecov/genomeCoverageBed?
written by kieft1bp •
-
localised drops in read depth across sam/bam
written by matthew.tarnowski1 •
-
From per bp coverage to average coverage in 10bp intervals
written by Adrian Pelin
-
Converting Bedgraph to coverage
written by chrisclarkson100
-
Use Bedtools to extract stranded read depth from BAM files
written by gtho123
-
Error for read density visualization
written by jolin0701-dy
-
editing count.py script of HTSeq to work with bed file
written by Kssr
