How to retrieve allelic frequencies(population wise) from dbsnp

Hi I have a list of snp ids

In the dbsnp site I need to get the population frequency data for each of them available in the tab frequency. I need to get the excel sheet available in the form of a download hyperlink.

snp

• 885 views • link

written 6.2 years ago by chattyfoot •

Please post your code.

• 0 views • link

written 6.2 years ago by cpad0112

0 answers

No answers yet.

More posts like this

Where to download the MAF database from 1000 genomes? ANNOVAR looks incomplete
written 3.6 years ago by jpablo •

I need the MAF of a list of SNPs, I'm using the latest 1000 Genomes variant file from ANNOVAR available here: http://www.openbioinformatics.org/annovar/download/hg19_1000g2015aug.zip But this list …
allele frequency in dbSNP
written 6.3 years ago by rotemkat •

Hi, Is there a way to get the allele frequency of each mutation in dbSNP? The data I downloaded from here ( ftp://ftp.ncbi.nih.gov/snp/organisms ) does …
Minor allele frequency
written 7.3 years ago by fatma.mokhtar •

Hallo, I have downloaded SNPs of genes of interest (Biomart/Ensembl) into an excel sheet, however, the Minor allele frequency (MAF) was not in the list, …
How to open SNPnexus output excel file with R package
written 7.5 years ago by Shicheng Guo

Hi All, I want to know how to open SNP nexus output excel files with R? I tried ‘readxl’, ‘gdata’ and some other R package, …
gnomad_AF from VEP is NA
written 8.3 years ago by gniknori •

Hi - when using VEP to get allele frequency information for a list of SNPs, I ask for the gnomad_AF column. I have noticed however …
How to get Population Genotype Frequency from 1000 genomes Perl API
written 11.0 years ago by mass2 •

I found out the only way to get genotype frequency programmatically from 1000 genomes is via the Perl API as per this answer: https://www.biostars.org/p/153923/#153929 Following …
Minor allele frequency calculation
written 11.7 years ago by Tark •

Hi everyone I need to understand Minor allele frequency A SNP with a allele (G) frequency of 0.40 implies that 40% of a population has …
NCBI GeneID vs ProteinID database
written 11.9 years ago by biolab

Hi everyone I am looking for NCBI **ProteinID vs GeneId pair database** as well as **Gene seq database**, because I have a comprehensive list of …
Variant prevalence not listed
written 11.9 years ago by chloe.p.oconnell •

Hi, I'm completing a variant analysis of rare variants found in the genomes of my cases vs. controls. I'm only looking at rare variants (variants …
Batch Conversion Of Affymetrix Snp Ids To Refsnp Ids
written 14.4 years ago by user1202664 •

<p>How can I convert Affymetrix SNP IDs of the form - SNP<em>A-8646962 - to RefSNP IDs (e.g. rs138274114 for SNP</em>A-8646962). I can do this one-by-one …