Bed file grepping from the list
Hi Stars, I have a bed file of size 20 GB and I need to grep some names(~5000) from the list. So I used this command for this
grep -wf list input.bed >out_grepped.txt
But it is taking more than a week to finish, most will fail. Is there any other methods to do the same
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Pierre Lindenbaum
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the_cowa •
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the_cowa •
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sort both files and use join https://linux.die.net/man/1/join
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was is a "value" ?
Like some names , examples cat0.1,cat0.45,dog.01 ..