how to assign annotated gene structure (from contigs) to chromosome coordinate(from HiC)?
Dear All: I'm a beginner of genome biology. I have assembly(de novo) a animal gemome which consists of contigs using nanopore sequencing tech. and I already annotated the gene structure(GFF file and fasta of contigs).Then ,in order to get a better assembly for chromosome-level research.I got a Hi-C squencing process.now I have the chromosome fasta file.But I don't know how to assign gene structure(gene\CDS\mRNA) to the Hi-C results.could you give me some advice or some software helpful?Thanks ！
• 694 views
•
link
written
by
ward200w •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Repeat Modeler Database Generation
written by SomeOne •
-
Use Hi-C Sequence Data of close relative for scaffolding of genome.
written by SomeOne •
-
Recommendation for de novo scaffolder
written by atia.amin2010 •
-
Improvement of genome assembly using illumina contigs and nanopore reads
written by KG •
-
Help fixing issue with genbank submission (FeatureBeginsOrEndsInGap)
written by jmartin77777 •
-
What's the right way to submit a genome assembly to NCBI?
written by liorglic
-
RNAHybrid -minimum free energy, structure and alignment query
written by swanti.gupta95 •
-
Help me choose an assembler (for something quite specific)
written by maxwhjohn1988
-
How to assign Fragment Length distribution parameters in RSEM when using Single strand contigs from…
written by zainab89fateh •
-
Maker Output: transcript names
written by mmacd •
