SNP Regression Analysis · Biostar

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SNP Regression Analysis

Hello all, I have 60 samples of Whole Genome Sequence (BAM, VCF ) File. Now I want to do SNP analysis ( I am trying to find some positions which differ among case and Control ). I did with Python and Found some Positions based on 70 % different among Case and Control. While I googled I found many Researchers are using plink and other tools for linear ( Logistic ) Regression and finding p values. if anybody has Notes, information, or links regarding file to Plink regression please share. I also watched some Youtube Videos but still which is insufficient. I have attached some of my data screenshots. 1. Sample of Merged 60 VCF File 2. sample of the single VCF file. enter image description here Thank You all

snp vcf plink wgs regression

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written 6.2 years ago by krishdb38 •

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