About the databases or computing tools of SNP features
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tools for assigning putative enhacers to respective genes
written by alejandrocastillaibeas 2Dear Biostars community, I am working with ChIP-seq and RNA-seq data of a TF. I know where the TF is binding and I know which …
-
About germline mutation database
written by Eric Wang 7Hi all, I want to download some data about the germline mutation. However, the germline data of many databases (such as TCGA) are controlled. Is …
-
About the missing values in the feature matrix
written by Eric Wang 7Hi all, I am studying the classification problem (or prediction problem) based on a feature matrix. But I found a lot of missing values in …
-
BLAST Database error: No alias or index file found for protein database [nr] in search path [D:\Tes…
written by Eric Wang 7Dear All I have downloaded the nr database by this command wget 'ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nr.gz' and have extracted the file "nr". When I run psiblast to obtain …
-
Applying machine learning algorithms on RNAseq data using R
written by rahel14350 4Dear all, have you had any experience to apply machine learning algorithms on RNAseq output (Gene set approached not sample base approaches)? What is the …
-
Data Transformations for machine learning
written by druggable 6Hi, I have multiple features as input for machine learning. My input features are normalized feature counts based on ChIP-Seq data, which I wish to …
-
what machine learning algorithms are good for mining different types of data simultaneously?
written by zhen.qin13 0I'm using python scikit-learn package so any demonstration using scikit learn function will be really appreciated :) <br> <br> Now I have several types of …
-
Use machine learning as classifier
written by cool.abbecker 3Dear community, I want to build a machine learning classifier using a k-mer approach like RDP (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950982/) using a different machine learning algorithm and building …
-
output features calculation from various SNP predictor programs
written by arronslacey 32Hi - I want to collect information on SNPs that are often used to predict how damaging they are. For example - using polyphen I …
-
A Good Snp Dataset For Gwa Study
written by alieh 3<p>Hi I'm a master student and want to apply machine learning method in GWAS data for my master thesis, but I dont know which data …
What is
the machine learning algorithm? What kind of SNPs, which species, coding/non-coding? Details please.SVM，random forest？ missense mutation, homo sapiens, coding. Thx