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WGBS Data Analysis Related

Hello I am working on WGBS Data. I am using MethylSeekR package

library(MethylSeekR)

set.seed(123)

system.file("extdata", "Lister2009_imr90_hg18_chr22.tab",package="MethylSeekR")

I understand, my input file will go in the place of "Lister2009_imr90_hg18_chr22.tab". Now my question is,

1) What is set.seed(123) ?

2) If I put my seq data in place of "Lister2009_imr90_hg18_chr22.tab" , then what is extdata?

Regards Shrinka

next-gen sequencing
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written by shrinka.genetics • shrinka.genetics

Hello shrinka.genetics!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

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written by Ram Ram

I have posted many questions, which one you are talking about?

Thanks Shrinka

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written by shrinka.genetics • shrinka.genetics

I have posted many questions

My point exactly. Keep all related discussion in a single thread unless the matter at hand actually requires to be asked as a new question.

which one are you talking about

I included a link to the one I'm talking about.

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written by Ram Ram

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