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How to convert 10X single nuclear RNA Seq bam file to fastq?

Hi All, I have 10X single-nuclear RNA Seq bam files and want to convert these to fastq files. I am not sure how can we do this? Will this be similarly treated as we handle scRNA Seq bam files using bamtofastq?

Thanks

10x genomics bamtofastq cellranger snrna

1 answer

Sure. Start with bamtofastq provided by 10x here.

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