how to use bedtools multicov
I want to use bedtools multicov to handle with .bam(10X scRNA-seq) files ,but the data belongs to 10X is special. so i dont know how to set parameter can get a good result
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fuhaolll2 •
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bedtoolsis great for many things (sc)RNA-seq is none of it. What exactly do you want to do, I am sure there is tailored software for it.except cellranger,which software is the best to do gene count (include exon)for scRNA-seq example: type start end gene 1 10000 exon 10 100 exon 120 220
exactly i want to use 10X scRNA-seq data to analyse alternative last exon ,after mapping then i get .bam file ,which software is a good choice?
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