What's the probability of genotype error at the end of 10 repeated A variants? Given low coverage sequencing of 1000G phase 1
I'm looking at GWAS data and some genome wide variants have a pattern of being at the dead end of ~10 repeating As (where effect allele is also A). I wonder what would be the probability of such coincidence and would it be likely due to 1000G low coverage sequencing methodology?
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