Reference genome for snpEff · Biostar

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Reference genome for snpEff

I'm using snpEff to annotate variants extracted from TCGA. I see that snpEff has a lot of different genome versions for annotation, and I figured I could just use hGRCh38, but I'm assuming I should probably use the same version that was used in TCGA. Does anyone know if snpEff has this version available? I couldn't seem to find it in the datasets. Thanks!

snpeff vcf assembly

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written 6.3 years ago by j.lunger18 •

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