i cant correspond gene ID

hello, i have gene ID from Deseq2, How can I find the official gene ID correspond to the gtf file?

next-gen rna-seq r

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written 6.3 years ago by eli •

Please add example data and show what you tried. Low-effort one-liner questions are typically not well appreciated and often remain unanswered.

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written 6.3 years ago by ATpoint

This is part of my data:

Zm00001d042263_T001 3130.583035 -5.00107158 0.209939378 -23.82150325    2.00E-125   7.64E-121
Zm00001d029720_T001 193.4226998 -6.048107207    0.259497668 -23.30698097    3.77E-120   7.20E-116
Zm00001d016394_T001 808.2234005 -8.942291132    0.403892549 -22.14027257    1.29E-108   1.65E-104
Zm00001d044978_T001 128.947596  -6.77610467 0.307219893 -22.05620409    8.33E-108   7.96E-104

I use DESeq2 and I have result data. I dont know how can I correspond the official gene ID to the gtf file?

I appreciate you

Thank you in advance

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updated 6.3 years ago by GenoMax

• written 6.3 years ago by eli •

Looks like the Zea mays genome. Your best bet may be to look for a more complete GTF from Gramene.org and re-map.

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written 6.3 years ago by GenoMax

0 answers

No answers yet.

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