Align protein in PyMol?
Hi, Could any one show me how I can extract a protein residue in a complex of two proteins and then align it with another protein? Thanks in advance!
pymol
• 183 views
•
link
written
by
bobbyle0210 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Residue-residue contact vs protein-protein interactions
written by Anh •Hi everyone, I'm concern about the problem of predicting binary protein-protein interaction. Two proteins are defined to interact if they form a complex executing a …
-
Visualizing Protein Protein residue interaction in Pymol
written by Omar Santiago •Hello! I have knowledge of the residues that are interacting between proteins (say Protein A and Protein B, and I know that, for example, residue …
-
Protein-protein docking analysis
written by mahafujulislamtonmoy •Recenlty, I have used Patchdock server for protein-protein docking. For analysis I used ligplot but the show me the complex is very big. Now how …
-
Which are the updated and readily available/downloadable drug-bound complexes or datasets available?
written by Misha •Hello, Which are the updated and readily available drug bound complexes or protein-ligand datasets available for drug binding residue prediction? If not, then how to …
-
How to identify interactive partners that contact a specific residues in a protein?
written by sunyp.imcas •Dear every one, If now I have a protein and know one residue position is very important in its interaction with other proteins in cells, …
-
ChIA-PET with two antibodies
written by mkh •Hi All, Is it possible to do ChIA-PET exp. with two different Antibodies at two steps? Imagine we have a complex with two proteins, proteinA …
-
Get Protein expression matrix
written by emanismail.92 •Hello, I have a huge list of uniprot proteins and need to get expression for all of them as matrix of genes and samples How …
-
Label protein strucuture residues in Chimera
written by lokraj2003I have generated proteins structure of capsid protein of two strains of viruses. I have modeled them showing Columbic electrostatic potential. I have opened them …
-
Amino acid distribution along the transmembrane
written by rkmishra16 •Dear all, I want to calculate frequency of various residues in transmembrane protein. For this, I have to align the membrane protein in the bilayer …
-
ab initio modeling reliability and protein-protein docking
written by BI<p>Hi. I have modeled one protein composed of peptide stretches from different proteins. I have used <em>ab initio</em> modeling to generate my model using phyre2 …
You can probably find at least some of what you need in this document. Also: buy a three-button mouse if you haven't already got one - it makes a huge difference when using PyMol.