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Free Alternatives To Pipeline Pilot

I got some Pipeline Pilot 8.0 protocols and I wonder if there is some open source or free alternative where I could use them

pipeline open-source workflow
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updated by Ram Ram • written by Flow Flow

it would be easier to answer if you can explain what Pipeline Pilot exactly is and what are you using it for.

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

3 answers

thanks for the answer. can any of them import or use somehow pipeline pilot protocols/components?

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written by Flow Flow

There is also Cyrille2 aimed at genome sequence data annotation workflows.

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written by Egon Willighagen Egon Willighagen

I don't know pipeline pilot, but I am missing GenePattern from the list of already mentioned workflow systems

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updated by Ram Ram • written by Andra Waagmeester Andra Waagmeester

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