Fasta Indexing for SNP Analysis
Hi! I am trying to carry out an SNP Analysis on Mycobacterium tuberculosis sequences. I am unfortunately not able to annotate it, and think the problem lies with the fasta index and dictionary files, which were created
The accession number of the fasta sequence is >NC_018143.2.
When I run a fasta index, this is the result generated:
NC_018143.2 4411709 65 70 71
Any advice on how to move forward would be very helpful!
I am very confused about whether the file generated is correct.
Thank you!
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arjun.murthy779 •
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How did you generate the index? What exactly are you listing in the
resultabove?