command line blast
I need a blast lance with a command line of a complete genome in fasta format so that I can find out which strain it is.
genome
sequence
• 841 views
•
link
written
by
AbdelAbdel
3
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
someone's already working with this helpful OrthoANI (OAT command line)
written by AbdelAbdel 3Hello, help me. I need to work with the useful OrthoANI (OAT command line) which measures the global similarity between genomes. I'm working on 145 …
-
Blastn query file with multiple sequences?
written by biogirl13 0Hi, I am pretty new to using the blastn command on the command line, and I wanted a little help figuring things out. So I …
-
Entrez Direct E-utilities on command line: efilter parameters for limiting efetch results
written by sovrappensiero 10I'm using the command line e-utilities tools to get nucleotide sequences from Biosample IDs. RIght now I'm working it out for just one ID, and …
-
alignment of whole genome sequence
written by sh_shaddad77 0I am searching for SNP by doing the alignment for 4 strain downloaded from NCBI genome database Fasta format. while bowtie program commands Fasta format …
-
How to separate the largest strain when it has the genome of its chromosome
written by Shelle 3I have large number of fasta files of bacteria from NCBI (in the GCF format) _genomic.fna.gz, and i am planning to extract the largest strain …
-
Command line BLAST
written by shrinivas.mchavan 0I installed command line BLAST and then added pre-formatted database from NCBI. now i am trying to validate it. When I extract a entry from …
-
full sequences from command line tblastn
written by peachila 0Hello, I am a new user of command line blast. I am using a protein sequence query to search through a DNA database I created …
-
how to locate a gene sequence among fastq files containing short reads
written by jerrybug109 2Hello! I've got a dozen different strains of bacteria for which we've sequenced the whole genomes of (we have paired end reads - forward and …
-
Bash extract accession from FASTA header and add GI
written by anon 0Hi all, I'm trying to create a pair of bash commands (or single command) to: (1) Extract $ACCESSION from a FASTA header from the format …
-
Downloading Complete Cds Data Of A Genome From Unigene And Refseq
written by Ritvik 3<p>Hi,</p> <p>I want to download complete CDS of a genome from refseq and unigene, from the ftp site i wasn't able to get the data. …
https://www.ncbi.nlm.nih.gov/books/NBK279680/