Hi everyone,

Is there some program that can compute and graph basic statistics for SNP analysis with an alignment (input file in Fasta format, aligned-nucleotide sequences): total variability of the dataset and per nucleotide position, nucleotide composition per position (frequencies of each nucleotide), mutation frequencies (in the whole dataset and per nucleotide position), type of mutations (every kind of substitutions, indels, in the entire dataset, and per nucleotide position).

Kind regards,

Gabriel