CIBERSORTx used no-negative matrix decomposition or not?
• 0 views
•
link
written
by
Shicheng Guo
CIBERSORT input file format
I have RNAseq data and their count table. now I would like to use CIBERSORT https://cibersort.stanford.edu/ but it is not clear what the format of its input is. do you guys know what the CIBERSORT input file format is?
1 answer
It is clearly mentioned here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895181/ . But the authors recommend CIBERSORTx, the next generation version of CIBERSORT, with support for single-cell RNA-seq and cell type-specific gene expression purification.
Log in to answer this question.
More posts like this
-
how to fix low RNA input in bulk RNAseq data analysis?
written by Sara
-
losing many genes while doing DGE on the RNAseq data due to read count threshold
written by Sara
-
CIBERSORT input file for RNA-Seq data
written by MS •
-
K-means for RNA seq gene clustering
written by curiousmind007 •
-
correct order of cut off and normalization in RNAseq data
written by Sara
-
quality control method for technical problem
written by Sara
-
[SOLVED] How to build a table with gene expression per cell type with Seurat ?
written by Evan •
-
What files should I ask for from protein array analysis, in order to carry out differential express…
written by reubenmcgregor88 •
-
counting the reads mapped only to the coding sequence
written by alirezamomeni707 •
-
coding sequnce read coun
written by ashkan
