Vcfanno bgzf error
Hello all,
Whenever I run vcfanno on my samples, I get this error:
vcfanno.go:115: found 12 sources from 3 files
vcfanno.go:156: falling back to non-bgzip
api.go:796: bix: error opening bgzf reader for example/exac.vcf.gz: bgzf: could not determine block size
Can somebody please explain what this error means and why this is happening? How can I solve this error?
Thank you!
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Very low average coverage obtained
written by mail2steff
how was compressed example/exac.vcf.gz ? gzip ? this is wrong. The file must be compressed with bgzip of bcftools.
the output of
file example/exac.vcf.gzshould begzip compressed data, **extra field**I am not sure how it was compressed as I got it from here: https://github.com/brentp/vcfanno When I tried running this example/exac.vcf.gz on Brentp's example input file called query.vcf.gz --> my code worked perfectly! I did exactly how it says to do under the "Example" section of Brentp's github page and it worked perfectly on their example files --> it is just not working on my files.
the file is ok